2021

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LASIGE-BioTM at MESINESP2: entity linking with semantic similarity and extreme multi-label classification on Spanish biomedical documents
Pedro Ruas | Vitor D. T. Andrade | Francisco M. Couto
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to - 24th, 2021

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Post-processing BioBERT And Using Voting Methods for Biomedical Question Answering
Margarida M. Campos | Francisco M. Couto
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to - 24th, 2021

2020

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ECIR 2020 workshops: assessing the impact of going online
Sérgio Nunes | Suzanne Little | Sumit Bhatia | Ludovico Boratto | Guillaume Cabanac | Ricardo Campos | Francisco M. Couto | Stefano Faralli | Ingo Frommholz | Adam Jatowt | Alípio Jorge | Mirko Marras | Philipp Mayr | Giovanni Stilo
2020 Volume 54 Issue 1

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Towards a Multilingual Corpus for Named Entity Linking Evaluation in the Clinical Domain
Pedro Ruas | André Lamúrias | Francisco M. Couto
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, SIIRH@ECIR 2020, Lisbon, Portugal, April 14, 2020

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Report of the First International Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages
Francisco M. Couto | Martin Krallinger
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, SIIRH@ECIR 2020, Lisbon, Portugal, April 14, 2020

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Biomedical Question Answering using Extreme Multi-Label Classification and Ontologies in the Multilingual Panorama
André Neves | André Lamúrias | Francisco M. Couto
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, SIIRH@ECIR 2020, Lisbon, Portugal, April 14, 2020

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Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, SIIRH@ECIR 2020, Lisbon, Portugal, April 14, 2020

Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, SIIRH@ECIR 2020, Lisbon, Portugal, April 14, 2020

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LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE
Pedro Ruas | Andre Lamurias | Francisco M. Couto
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020

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Extreme Multi-Label Classification applied to the Biomedical and Multilingual Panorama
André Neves | André Lamúrias | Francisco M. Couto
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020

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An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents
Jiayuan He | Dat Quoc Nguyen | Saber A. Akhondi | Christian Druckenbrodt | Camilo Thorne | Ralph Hoessel | Zubair Afzal | Zenan Zhai | Biaoyan Fang | Hiyori Yoshikawa | Ameer Albahem | Jingqi Wang | Yuankai Ren | Zhi Zhang | Yaoyun Zhang | Mai Hoang Dao | Pedro Ruas | Andre Lamurias | Francisco M. Couto | Jenny Copara | Nona Naderi | Julien Knafou | Patrick Ruch | Douglas Teodoro | Daniel M. Lowe | John Mayfield | Abdullatif Köksal | Hilal Dönmez | Elif Özkirimli | Arzucan Özgür | Darshini Mahendran | Gabrielle Gurdin | Nastassja Lewinski | Christina Tang | Bridget T. McInnes | C. S. Malarkodi | Pattabhi Rk Rao | Sobha Lalitha Devi | Lawrence Cavedon | Trevor Cohn | Timothy Baldwin | Karin Verspoor
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020

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Proposal of the First International Workshop on Semantic Indexing and Information Retrieval for Health from Heterogeneous Content Types and Languages (SIIRH)
Francisco M. Couto | Martin Krallinger
Advances in Information Retrieval - 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings, Part II

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BiOnt: Deep Learning Using Multiple Biomedical Ontologies for Relation Extraction
Diana Sousa | Francisco M. Couto
Advances in Information Retrieval - 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings, Part II

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Hybrid Semantic Recommender System for Chemical Compounds
Márcia Barros | André Moitinho | Francisco M. Couto
Advances in Information Retrieval - 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings, Part II

2014

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Learning temporal-dependent ranking models
Miguel Costa | Francisco M. Couto | Mário J. Silva
The 37th International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR '14, Gold Coast , QLD, Australia - July 06 - 11, 2014

2013

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A survey of web archive search architectures
Miguel Costa | Daniel Gomes | Francisco M. Couto | Mário J. Silva
22nd International World Wide Web Conference, WWW '13, Rio de Janeiro, Brazil, May 13-17, 2013, Companion Volume

2010

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Geographic signatures for semantic retrieval
David S. Batista | Mário J. Silva | Francisco M. Couto | Bibek Behera
Proceedings of the 6th Workshop on Geographic Information Retrieval, GIR 2010, Zurich, Switzerland, February 18-19, 2010

2006

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Validating associations in biological databases
Francisco M. Couto | Mário J. Silva | Pedro Coutinho
Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, Arlington, Virginia, USA, November 6-11, 2006

2005

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Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
Francisco M. Couto | Mário J. Silva | Pedro Coutinho
Proceedings of the 2005 ACM CIKM International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005