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Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009

Doheon Lee, Russ B. Altman, Min Song, Jun Huan (Editors)

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Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009

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Data mining in bioinformatics: challenges and opportunities
Xiaohua Hu

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Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers
Bin Yang | Yu Peng | Henry C. M. Leung | Siu-Ming Yiu | Jing-Chi Chen | Francis Y. L. Chin

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Multivariate classification of urine metabolome profiles for breast cancer diagnosis
Younghoon Kim | Imhoi Koo | Byung Hwa Jung | Bong Chul Chung | Doheon Lee

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DrugNerAR: linguistic rule-based anaphora resolver for drug-drug interaction extraction in pharmacological documents
Isabel Segura-Bedmar | Mario Crespo | César de Pablo-Sánchez | Paloma Martínez

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Linear predictive coding representation of correlated mutation for protein sequence alignment
Chan-seok Jeong | Dongsup Kim

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Mining cancer genes with running-sum statistics
Inho Park | Kwang H. Lee | Doheon Lee

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Enabling multi-level relevance feedback on pubmed by integrating rank learning into DBMS
Hwanjo Yu | Taehoon Kim | Jinoh Oh | Ilhwan Ko | Sungchul Kim | Wook-Shin Han

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MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge
Ali Zeeshan Ijaz | Min Song | Doheon Lee

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Learning word sense disambiguation in biomedical text with difference between training and test distributions
Jeong Woo Son | Seong-Bae Park

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Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles
Yang Cong | Takeyuki Tamura | Tatsuya Akutsu | Wai-Ki Ching

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A web-based comparative visualization system for human endogenous RetroVirus(HERV) on whole genomes
Woo-Keun Chung | Hyong-Jun Kim | Hwan-Gue Cho

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Incremental non-gaussian analysis of microarray gene expression data
Kam Swee Ng | Hyung-Jeong Yang | Sun-Hee Kim

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A graph-based approach for biomedical thesaurus expansion
Ikumi Suzuki | Kazuo Hara | Masashi Shimbo | Yuji Matsumoto

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LITSEEK: public health literature search by metadata enhancement with external knowledge bases
Priyanka Sharad Prabhu | Shamkant B. Navathe | Stephen Tyler | Venu Dasigi | Neha Narkhede | Balaji Palanisamy

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The challenge of high recall in biomedical systematic search
Sarvnaz Karimi | Justin Zobel | Stefan Pohl | Falk Scholer

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A large-scale gene network inference system for systems biology on supercomputing resources
Younghoon Kim | Doheon Lee | Yongseong Cho | Sang Joo Lee

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An outcome discovery system to determine mortality factors in primary care facilities
Jeremias Murillo | Min Song