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Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009

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Data mining in bioinformatics: challenges and opportunities
Xiaohua Hu

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Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers
Bin Yang | Yu Peng | Henry C. M. Leung | Siu-Ming Yiu | Jing-Chi Chen | Francis Y. L. Chin

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Multivariate classification of urine metabolome profiles for breast cancer diagnosis
Younghoon Kim | Imhoi Koo | Byung Hwa Jung | Bong Chul Chung | Doheon Lee

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DrugNerAR: linguistic rule-based anaphora resolver for drug-drug interaction extraction in pharmacological documents
Isabel Segura-Bedmar | Mario Crespo | César de Pablo-Sánchez | Paloma Martínez

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Linear predictive coding representation of correlated mutation for protein sequence alignment
Chan-seok Jeong | Dongsup Kim

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Mining cancer genes with running-sum statistics
Inho Park | Kwang H. Lee | Doheon Lee

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Enabling multi-level relevance feedback on pubmed by integrating rank learning into DBMS
Hwanjo Yu | Taehoon Kim | Jinoh Oh | Ilhwan Ko | Sungchul Kim | Wook-Shin Han

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MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge
Ali Zeeshan Ijaz | Min Song | Doheon Lee

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Learning word sense disambiguation in biomedical text with difference between training and test distributions
Jeong Woo Son | Seong-Bae Park

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Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles
Yang Cong | Takeyuki Tamura | Tatsuya Akutsu | Wai-Ki Ching

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A web-based comparative visualization system for human endogenous RetroVirus(HERV) on whole genomes
Woo-Keun Chung | Hyong-Jun Kim | Hwan-Gue Cho

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Incremental non-gaussian analysis of microarray gene expression data
Kam Swee Ng | Hyung-Jeong Yang | Sun-Hee Kim

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A graph-based approach for biomedical thesaurus expansion
Ikumi Suzuki | Kazuo Hara | Masashi Shimbo | Yuji Matsumoto

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LITSEEK: public health literature search by metadata enhancement with external knowledge bases
Priyanka Sharad Prabhu | Shamkant B. Navathe | Stephen Tyler | Venu Dasigi | Neha Narkhede | Balaji Palanisamy

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The challenge of high recall in biomedical systematic search
Sarvnaz Karimi | Justin Zobel | Stefan Pohl | Falk Scholer

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A large-scale gene network inference system for systems biology on supercomputing resources
Younghoon Kim | Doheon Lee | Yongseong Cho | Sang Joo Lee

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An outcome discovery system to determine mortality factors in primary care facilities
Jeremias Murillo | Min Song