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Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, DTMBIO@CIKM 2012, Maui, Hawaii, USA, October 29, 2012

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Session details: Mining biological data and text
Min Song

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Session details: Mining clinical data and text
Hua Xu

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Session details: Keynote address
Doheon Lee

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Detecting type 2 diabetes causal single nucleotide polymorphism combinations from a genome-wide association study dataset with optimal filtration
Chiyong Kang | Hyeji Yu | Gwan-Su Yi

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Lexicon-free and context-free drug names identification methods using hidden markov models and pointwise mutual information
Jacek Malyszko | Agata Filipowska

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Clinical entity recognition using structural support vector machines with rich features
Buzhou Tang | Hongxin Cao | Yonghui Wu | Min Jiang | Hua Xu

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Inferring appropriate eligibility criteria in clinical trial protocols without labeled data
Angelo C. Restificar | Sophia Ananiadou

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Predicting baby feeding method from unstructured electronic health record data
Ashwani Rao | Kristin Maiden | Ben Carterette | Deb Ehrenthal

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Extracting structured information from free-text medication prescriptions using dependencies
Andrew D. MacKinlay | Karin M. Verspoor

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Indexing methods for efficient protein 3D surface search
Sungchul Kim | Lee Sael | Hwanjo Yu

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Protein complex prediction via bottleneck-based graph partitioning
Jaegyoon Ahn | Dae Hyun Lee | Youngmi Yoon | Yunku Yeu | Sanghyun Park

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Finding associations among SNPS for prostate cancer using collaborative filtering
Rohit Kugaonkar | Aryya Gangopadhyay | Yelena Yesha | Anupam Joshi | Yaacov Yesha | Michael A. Grasso | Mary Brady | Naphtali Rishe

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TNMCA: generation and application of network motif based inference models for drug repositioning
Jaejoon Choi | Kwangmin Kim | Min Song | Doheon Lee

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High precision rule based PPI extraction and per-pair basis performance evaluation
Junkyu Lee | Seongsoon Kim | Sunwon Lee | Kyubum Lee | Jaewoo Kang

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Rule-based whole body modeling for analyzing multi-compound effects
Woochang Hwang | Yongdeuk Hwang | Sunjae Lee | Doheon Lee