Francisco M. Couto

2025

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lasigeBioTM at BioASQ25 Task GutBrainIE - Lean Large Language Models with Syntactic Features.
Sofia I. R. Conceição|Paulo R. C. Lopes|Francisco M. Couto
Working Notes of the Conference and Labs of the Evaluation Forum, CLEF 2025, Madrid, Spain, 9-12 September 2025.
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lasigeBioTM: A Lean Biomedical QA System Empowered by Structured Knowledge.
Paulo R. C. Lopes|Sofia I. R. Conceição|Maria Fernandes|Francisco M. Couto
Working Notes of the Conference and Labs of the Evaluation Forum, CLEF 2025, Madrid, Spain, 9-12 September 2025.

2024

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LLM Fine-Tuning With Biomedical Open-Source Data.
Christopher Anaya|Maria Fernandes|Francisco M. Couto
Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2024), Grenoble, France, 9-12 September, 2024.

2021

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Post-processing BioBERT And Using Voting Methods for Biomedical Question Answering.
Margarida M. Campos|Francisco M. Couto
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to - 24th, 2021.
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LASIGE-BioTM at MESINESP2: entity linking with semantic similarity and extreme multi-label classification on Spanish biomedical documents.
Pedro Ruas|Vitor D. T. Andrade|Francisco M. Couto
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to - 24th, 2021.

2020

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ECIR 2020 workshops: assessing the impact of going online.
Sérgio Nunes|Suzanne Little|Sumit Bhatia|Ludovico Boratto|Guillaume Cabanac|Ricardo Campos|Francisco M. Couto|Stefano Faralli|Ingo Frommholz|Adam Jatowt|Alípio Jorge|Mirko Marras|Philipp Mayr|Giovanni Stilo
SIGIR Forum 2020 Volume 54 Issue 1
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An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents.
Jiayuan He|Dat Quoc Nguyen|Saber A. Akhondi|Christian Druckenbrodt|Camilo Thorne|Ralph Hoessel|Zubair Afzal|Zenan Zhai|Biaoyan Fang|Hiyori Yoshikawa|Ameer Albahem|Jingqi Wang|Yuankai Ren|Zhi Zhang|Yaoyun Zhang|Mai Hoang Dao|Pedro Ruas|Andre Lamurias|Francisco M. Couto|Jenny Copara|Nona Naderi|Julien Knafou|Patrick Ruch|Douglas Teodoro|Daniel M. Lowe|John Mayfield|Abdullatif Köksal|Hilal Dönmez|Elif Özkirimli|Arzucan Özgür|Darshini Mahendran|Gabrielle Gurdin|Nastassja Lewinski|Christina Tang|Bridget T. McInnes|C. S. Malarkodi|Pattabhi R. K. Rao|Sobha Lalitha Devi|Lawrence Cavedon|Trevor Cohn|Timothy Baldwin|Karin Verspoor
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020.
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Extreme Multi-Label Classification applied to the Biomedical and Multilingual Panorama.
André Neves|André Lamúrias|Francisco M. Couto
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020.
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LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE.
Pedro Ruas|Andre Lamurias|Francisco M. Couto
Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020.
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Hybrid Semantic Recommender System for Chemical Compounds.
Márcia Barros|André Moitinho|Francisco M. Couto
Advances in Information Retrieval - 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings, Part II
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Proposal of the First International Workshop on Semantic Indexing and Information Retrieval for Health from Heterogeneous Content Types and Languages (SIIRH).
Francisco M. Couto|Martin Krallinger
Advances in Information Retrieval - 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings, Part II
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BiOnt: Deep Learning Using Multiple Biomedical Ontologies for Relation Extraction.
Diana F. Sousa|Francisco M. Couto
Advances in Information Retrieval - 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings, Part II

2014

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Learning temporal-dependent ranking models.
Miguel Costa|Francisco M. Couto|Mário J. Silva
The 37th International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR '14, Gold Coast , QLD, Australia - July 06 - 11, 2014

2013

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A survey of web archive search architectures.
Miguel Costa|Daniel Gomes|Francisco M. Couto|Mário J. Silva
22nd International World Wide Web Conference, WWW '13, Rio de Janeiro, Brazil, May 13-17, 2013, Companion Volume

2006

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Validating associations in biological databases.
Francisco M. Couto|Mário J. Silva|Pedro Coutinho
Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, Arlington, Virginia, USA, November 6-11, 2006

2005

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Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors.
Francisco M. Couto|Mário J. Silva|Pedro Coutinho
Proceedings of the 2005 ACM CIKM International Conference on Information and Knowledge Management, Bremen, Germany, October 31 - November 5, 2005